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!new! - Digitalplayground Aria Alexander Keiran Lee Portable

Software for motif discovery and next generation sequencing analysis

HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and ChIP-Seq analysis. It is a collection of command line programs for unix-style operating systems written in mostly perl and c++. Homer was primarily written as a de novo motif discovery algorithm that is well suited for finding 8-12 bp motifs in large scale genomics data.

Hardware Requirements (recommended): 2+ Gb memory (4-8+ Gb), 10+ Gb Hard Drive space (50+ Gb)
Software Requirements: Unix compatible OS (or cygwin), perl, gcc, make, wget (optional for full functionality: R, DESeq2, blat, bedGraphToBigWig, liftOver)
License: GPLv3

HOMER works on pretty much any Linux/UNIX systems, including MacOS (if Xcode compilers are installed) and on Windows using either cygwin or a Linux subsystem.

If you are looking specifically for HOMER2, you are in the right place! HOMER2 is integrated into HOMER.

Full Program Download

Together, these two talented individuals have been working to create a new kind of experience that combines the best of adult entertainment with the intimacy and connection of a live encounter. Their latest collaboration, which we'll explore in more detail below, is a portable and immersive experience that is designed to bring the excitement of the digital playground directly to the user's fingertips.

"Portable" refers to content designed specifically for the mobile user experience. Vertical & Short-Form Edits:

Program Components and Older Versions

!new! - Digitalplayground Aria Alexander Keiran Lee Portable

Together, these two talented individuals have been working to create a new kind of experience that combines the best of adult entertainment with the intimacy and connection of a live encounter. Their latest collaboration, which we'll explore in more detail below, is a portable and immersive experience that is designed to bring the excitement of the digital playground directly to the user's fingertips.

"Portable" refers to content designed specifically for the mobile user experience. Vertical & Short-Form Edits: digitalplayground aria alexander keiran lee portable


Update Information

Change Log - Short description of recent changes

update.txt - Current HOMER configuration list (Currently support human hg17/hg18/hg19, mouse mm8/mm9, rat rn4, X. tropicalis xenTro2, drosophila dm3, and C. elegans ce6, Zebrafish danRer7, yeast sacCer2, Arabidopsis tair10, Rice msu6, Pombe ASM294v1)
digitalplayground aria alexander keiran lee portable
Can't figure something out? Questions, comments, concerns, or other feedback:
cbenner@ucsd.edu